  {"id":229,"date":"2016-02-16T12:06:46","date_gmt":"2016-02-16T18:06:46","guid":{"rendered":"http:\/\/www.vanderbilt.edu\/cit\/?page_id=229"},"modified":"2025-04-29T10:30:56","modified_gmt":"2025-04-29T16:30:56","slug":"publications-useful-links-cit","status":"publish","type":"page","link":"https:\/\/www.vanderbilt.edu\/cit\/publications-useful-links-cit\/","title":{"rendered":"Publications &amp; Useful Links"},"content":{"rendered":"<div class=\"flex_column av_one_full  flex_column_div av-zero-column-padding first  avia-builder-el-0  el_before_av_one_half  avia-builder-el-first  \" style='border-radius:0px; '><div  style='background:#f2f2f2;color:#3a3a3a;border-color:#bababa;' class='av_promobox  avia-button-no   avia-builder-el-1  avia-builder-el-no-sibling '>\t\t<div class='avia-promocontent'><\/p>\n<p style=\"text-align: center\">Below you will find a collection of publications and useful links we have prepared for shared resource center collaborators and clients.<\/p>\n<p style=\"text-align: center\">For more information regarding authorship and center acknowledgement guidelines, please visit our <a href=\"https:\/\/www.vanderbilt.edu\/cit\/center-acknowledgements-authorship\/\">Resource User Policies<\/a> hub.<\/p>\n<p>\n<\/div><\/div><\/div>\n<div class=\"flex_column av_one_half  flex_column_div av-zero-column-padding first  avia-builder-el-2  el_after_av_one_full  el_before_av_one_half  column-top-margin\" style='border-radius:0px; '><section class=\"av_textblock_section \"  itemscope=\"itemscope\" itemtype=\"https:\/\/schema.org\/CreativeWork\" ><div class='avia_textblock  '   itemprop=\"text\" ><h3>Recent CIT Publications<\/h3>\n<ol>\n<li>Stark RJ, Schrimpe-Rutledge AC, Codreanu SG, Sherrod SD, McLean JA, Krispinsky LT, Lamb FS. ENDOTHELIAL-DEPENDENT VASCULAR REACTIVITY AFTER CARDIOPULMONARY BYPASS IS ASSOCIATED WITH UNIQUE METABOLOMIC SIGNATURES. Shock. 2024 Nov 1;62(5):656-662.<br \/>\nDOI: <a href=\"https:\/\/doi.org\/10.1097\/SHK.0000000000002446\">10.1097\/SHK.0000000000002446<\/a><\/li>\n<li>Mouton AJ, Aitken NM, Morato JG, O&#8217;Quinn KR, do Carmo JM, da Silva AA, Omoto ACM, Li X, Wang Z, Schrimpe-Rutledge AC, Codreanu SG, Sherrod SD, McLean JA, Stanford JK, Brown JA, Hall JE. Glutamine metabolism improves left ventricular function but not macrophage-mediated inflammation following myocardial infarction. Am J Physiol Cell Physiol. 2024 Sep 1;327(3):C571-C586.<br \/>\nDOI: <a href=\"https:\/\/doi.org\/10.1152\/ajpcell.00272.2024\">10.1152\/ajpcell.00272.2024<\/a><\/li>\n<li>Westland MD, Schrimpe-Rutledge AC, Codreanu SG, Sherrod SD, McLean JA, McClain MS, Cover TL. Taurine modulates host cell responses to Helicobacter pylori VacA toxin. Infect Immun. 2024 Aug 13;92(8):e0022424.<br \/>\nDOI: <a href=\"https:\/\/doi.org\/10.1128\/iai.00224-24\">10.1128\/iai.00224-24<\/a><\/li>\n<li>Pfalzer AC, Shiino S, Silverman J, Codreanu SG, Sherrod SD, McLean JA, Claassen DO. Alterations in Cerebrospinal Fluid Urea Occur in Late Manifest Huntington&#8217;s Disease. J Huntingtons Dis. 2024;13(1):103-111.<br \/>\nDOI: <a href=\"https:\/\/doi.org\/10.3233\/JHD-231511\">10.3233\/JHD-231511<\/a><\/li>\n<li>Schalich KM, Buendia MA, Kaur H, Choksi YA, Washington MK, Codreanu GS, Sherrod SD, McLean JA, Peek RM Jr, Acra SA, Townsend SD, Yan F. A human milk oligosaccharide prevents intestinal inflammation in adulthood via modulating gut microbial metabolism. mBio. 2024 Apr 10;15(4):e0029824.<br \/>\nDOI: <a href=\"https:\/\/doi.org\/10.1128\/mbio.00298-24\">10.1128\/mbio.00298-24<\/a><\/li>\n<\/ol>\n<p>See the complete list <a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/?term=Sherrod+SD%2C+McLean+JA&amp;sort=date\">HERE<\/a><\/p>\n<\/div><\/section><br \/>\n<div   class='hr hr-default   avia-builder-el-4  el_after_av_textblock  el_before_av_textblock '><span class='hr-inner ' ><span class='hr-inner-style'><\/span><\/span><\/div><br \/>\n<section class=\"av_textblock_section \"  itemscope=\"itemscope\" itemtype=\"https:\/\/schema.org\/CreativeWork\" ><div class='avia_textblock  '   itemprop=\"text\" ><h3>Suggested Reading<\/h3>\n<ul>\n<li>Leaptrot KL, May JC, Dodds JN, McLean JA, Ion mobility conformational lipid atlas for highconfidence lipidomics,\u00a0<em>Nat. Commun<\/em>\u00a0<strong>2019<\/strong>, 10:985.<br \/>\nDOI:\u00a0<a href=\"https:\/\/www.nature.com\/articles\/s41467-019-08897-5\" target=\"_blank\" rel=\"noopener\">10.1038\/s41467-019-08897<\/a><\/li>\n<li>Picache JA, Rose BS, Balinski A, Leaptrot KL, Sherrod SD, May JC, McLean JA,\u00a0Collision cross section compendium to annotate and predict multi-omic compound identities,\u00a0<em>Chem Sci<\/em>\u00a0<strong>2019<\/strong>,\u00a010, 983-993.<br \/>\nDOI:\u00a0<a title=\"Link to landing page via DOI\" href=\"https:\/\/doi.org\/10.1039\/C8SC04396E\" target=\"_blank\" rel=\"noopener\">10.1039\/C8SC04396E<\/a><\/li>\n<li>Schrimpe-Rutledge AC, Codreanu SG, Sherrod SD, McLean JA, Untargeted Metabolomics Strategies \u2013 Challenges and Emerging Directions,\u00a0<em>Journal of the American Society for Mass Spectrometry\u00a0<\/em><strong>2016<\/strong>, 27:1897.<br \/>\nDOI: <a href=\"https:\/\/link.springer.com\/article\/10.1007%2Fs13361-016-1469-y\" target=\"_blank\" rel=\"nofollow noopener\">10.1007\/s13361-016-1469-y<\/a><\/li>\n<li>Patti GJ, Yanes O, Siuzdak G. Innovation: Metabolomics: the apogee of the omics trilogy. Nat Rev Mol Cell Biol. 2012 Mar 22;13(4):263-9.<br \/>\nDOI: <a href=\"https:\/\/doi.org\/10.1038\/nrm3314\">10.1038\/nrm3314<\/a><\/li>\n<\/ul>\n<\/div><\/section><\/p><\/div><div class=\"flex_column av_one_half  flex_column_div av-zero-column-padding   avia-builder-el-6  el_after_av_one_half  el_before_av_hr  column-top-margin\" style='border-radius:0px; '><section class=\"av_textblock_section \"  itemscope=\"itemscope\" itemtype=\"https:\/\/schema.org\/CreativeWork\" ><div class='avia_textblock  '   itemprop=\"text\" ><h3>Patents<\/h3>\n<ol>\n<li>KL Leaptrot, JC May, JA McLean,\u00a0METHODS AND SYSTEMS FOR ION MOBILITY AND MASS ANALYSIS. <a href=\"https:\/\/www.freepatentsonline.com\/y2021\/0090871.html\" target=\"_blank\" rel=\"noopener\">US Patent App. 16\/962,744, 2021<\/a><\/li>\n<li>Caprioli R., Wikswo J., McLean J., Skaar E., Norris J.L., Lacy D.B., Sherrod S., Pino J., Gutierrez D., Muszynski N.D., Farrow M. (2020) High-Throughput, Multi-Omics Approach to Determine and Validate De Novo Global Mechanisms of Action for Drugs and Toxins. <a href=\"https:\/\/patentimages.storage.googleapis.com\/ad\/64\/a4\/2d28627674621c\/US10607721.pdf\" target=\"_blank\" rel=\"noopener\"><i>U.S. Patent No. <\/i><i>U<\/i><i>S10,607,721 B2<\/i><\/a>.<\/li>\n<li>McLean, J. A., Russell, D. H., Egan, T. F., Ugarov, M. V. and Schultz, J. A. (2010) Multiplex Data Acquisition Modes for Ion Mobility-Mass Spectrometry. <a href=\"https:\/\/patents.google.com\/patent\/US7745780B2\/en\" target=\"_blank\" rel=\"noopener\"><i>U. S. Patent No. US7745780B2.<\/i><\/a><\/li>\n<\/ol>\n<\/div><\/section><br \/>\n<div   class='hr hr-default   avia-builder-el-8  el_after_av_textblock  el_before_av_textblock '><span class='hr-inner ' ><span class='hr-inner-style'><\/span><\/span><\/div><br \/>\n<section class=\"av_textblock_section \"  itemscope=\"itemscope\" itemtype=\"https:\/\/schema.org\/CreativeWork\" ><div class='avia_textblock  '   itemprop=\"text\" ><h3>Useful Links\/Resources<\/h3>\n<ol>\n<li><a href=\"http:\/\/www.vanderbilt.edu\/AnS\/Chemistry\/groups\/mcleanlab\/\" target=\"_blank\" rel=\"nofollow noopener\">The McLean Group<\/a><\/li>\n<li><a href=\"http:\/\/www.vanderbilt.edu\/chemistry\/\" target=\"_blank\" rel=\"nofollow noopener\">91³Ô¹ÏÍø Department of Chemistry<\/a><\/li>\n<li><a href=\"https:\/\/www.vumc.org\/cqs\/\" target=\"_blank\" rel=\"noopener\">Center for Quantitative Sciences<\/a>\u00a0at 91³Ô¹ÏÍø<br \/>\nOur collaborators for advanced statistical modeling and analysis of molecular omics results for basic science, translational, and clinical research projects<\/li>\n<li><a href=\"https:\/\/lab.vanderbilt.edu\/microbiome\/\" target=\"_blank\" rel=\"noopener\">91³Ô¹ÏÍø Microbiome Innovation Center<\/a> (VMIC)<br \/>\nVMIC coordinates and accelerates interdisciplinary scholarship to establish long-lasting resources in microbiome research and education. This effort brings together approximately 300 members (faculty, staff, students) from six 91³Ô¹ÏÍø schools to understand, translate, and disseminate the principles that shape host-microbiome interactions, microbial genomics and metabolism, intimate symbiotic relationships, virology, epidemiology, statistical modeling, and applications for precision medicine.<\/li>\n<li><a href=\"http:\/\/metabolomicssociety.org\/\" target=\"_blank\" rel=\"nofollow noopener\">Metabolomics Society<\/a><\/li>\n<li><a href=\"http:\/\/www.asms.org\/\" target=\"_blank\" rel=\"nofollow noopener\">American Society for Mass Spectrometry<\/a><\/li>\n<li><a href=\"https:\/\/epi.grants.cancer.gov\/Consortia\/mQACC\/\" target=\"_blank\" rel=\"noopener\">Metabolomics Quality Assurance and Control Consortium (mQACC)<\/a><\/li>\n<li>Metabolomics Databases\/Libraries:\n<ul>\n<li><a href=\"https:\/\/metlin.scripps.edu\/index.php\" target=\"_blank\" rel=\"nofollow noopener\">Metlin<\/a><\/li>\n<li><a href=\"https:\/\/www.nist.gov\/\" target=\"_blank\" rel=\"nofollow noopener\">NIST<\/a><\/li>\n<li><a href=\"http:\/\/www.hmdb.ca\/\" target=\"_blank\" rel=\"nofollow noopener\">HMDB<\/a><\/li>\n<li><a href=\"http:\/\/www.massbank.jp\/?lang=en\" target=\"_blank\" rel=\"nofollow noopener\">MassBank<\/a><\/li>\n<li><a href=\"http:\/\/www.lipidmaps.org\/\" target=\"_blank\" rel=\"nofollow noopener\">LipidMAPS<\/a><\/li>\n<\/ul>\n<\/li>\n<li>Open Source Data Analysis\u00a0Software:\n<ul>\n<li><a href=\"http:\/\/www.metaboanalyst.ca\/\" target=\"_blank\" rel=\"nofollow noopener\">Metaboanalyst<\/a><\/li>\n<li><a href=\"http:\/\/www.cytoscape.org\/\" target=\"_blank\" rel=\"nofollow noopener\">Cytoscape<\/a><\/li>\n<li><a href=\"https:\/\/shuzhao-li.github.io\/mummichog.org\/index.html\" target=\"_blank\" rel=\"nofollow noopener\">Mummichog<\/a><\/li>\n<li><a href=\"https:\/\/xcmsonline.scripps.edu\/landing_page.php?pgcontent=mainPage\" target=\"_blank\" rel=\"nofollow noopener\">XCMS<\/a><\/li>\n<\/ul>\n<\/li>\n<\/ol>\n<\/div><\/section><\/p><\/div><div  style='height:30px' class='hr hr-invisible   avia-builder-el-10  el_after_av_one_half  avia-builder-el-last '><span class='hr-inner ' ><span class='hr-inner-style'><\/span><\/span><\/div><\/p>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":959,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/www.vanderbilt.edu\/cit\/wp-json\/wp\/v2\/pages\/229"}],"collection":[{"href":"https:\/\/www.vanderbilt.edu\/cit\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.vanderbilt.edu\/cit\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.vanderbilt.edu\/cit\/wp-json\/wp\/v2\/users\/959"}],"replies":[{"embeddable":true,"href":"https:\/\/www.vanderbilt.edu\/cit\/wp-json\/wp\/v2\/comments?post=229"}],"version-history":[{"count":70,"href":"https:\/\/www.vanderbilt.edu\/cit\/wp-json\/wp\/v2\/pages\/229\/revisions"}],"predecessor-version":[{"id":1660,"href":"https:\/\/www.vanderbilt.edu\/cit\/wp-json\/wp\/v2\/pages\/229\/revisions\/1660"}],"wp:attachment":[{"href":"https:\/\/www.vanderbilt.edu\/cit\/wp-json\/wp\/v2\/media?parent=229"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}